A new section for the MeDiTATe project website: discover the Publications area
A new section is now available on the MeDiTATe website. The page Publications groups all the papers currently published from the Early Stage Researchers in scientific journals.
The web page is available at the following link: https://meditate-project.eu/publications/.
The section can also be reached by clicking the Publication button on the website header, as shown in the presentation image.
The MeDiTATe project at the XI Annual Meeting of the Italian Chapter of the European Society of Biomechanics (ESB-ITA)
The MeDiTATe project will be participating in the XI Annual Meeting of the Italian Chapter of the European Society of Biomechanics (ESB-ITA22). The event, hosted by the BioCardioLab group from Fondazione Toscana G. Monasterio, will be held in Massa (Italy) on 6th and 7th October, 2022.
Five of our Early Stage Researchers will present the results of their work, described in the following lines.
Leonardo Geronzi – ESR 02: A method to calibrate the mechanical boundary conditions of a high-fidelity thoracic aorta model. In this work, a calibration of the mechanical boundary conditions for a thoracic aorta model was performed, including the effect of the soft tissue, the interaction of the vessel with the spine and the motion due to the heart. We minimised the discrepancy between the splines derived from the segmented boundaries of cine magnetic resonance imaging (cine-MRI) data and the respective splines built from the deformed computational model. We then performed fluid-structure interaction analysis with the calibrated patient-specific model studying the effect of the heart motion on the aortic wall.
Beatrice Bisighini – ESR 03: Towards a real-time simulator of flow diverters deployment based on model order reduction. With the aim of developing a computational tool to assist surgeons in the selection of the best device for patient-specific cerebral aneurysms treatment, in this study we propose a fast and accurate reduced-order modelling scheme, based on finite element simulations, to compute in real-time the deployed configuration of flow diverters within idealised vessel models.
Martino Andrea Scarpolini – ESR 09: Deploying digital twins of the cardiovascular system in clinics: a deep learning-based automatized framework. Digital twins represent a new powerful numerical tool to give personalized treatment for cardiovascular diseases, however their translation in a clinical environment is still limited mainly due to long computational times. This work shows an automatized workflow to build a real-time digital twin using deep learning algorithms and computational fluid dynamics simulations. Results show that the computation time can be reduced from hours to a few seconds.
Francesco Bardi – ESR 10: LED illuminated PIV velocity field characterization in a patient specific aortic aneurysm phantom. The Abdominal Aortic Aneurysm (AAA) is a highly diffused life-threatening condition. In recent years, experimental and numerical techniques were demonstrated to be reliable tools for AAA investigation. Given this, a Hybrid Mock Circulatory Loop and a cost-effective LED Particle Image Velocimetry (PIV) setup were used to characterize the fluid dynamic behaviour in a compliant AAA phantom. Several boundary conditions have been tested, and the instantaneous velocity field was measured in lower part of the aneurysm.
Maria Nicole Antonuccio – ESR 14: An experimental/computational approach for fluid dynamic characterization of AAA Compliant phantoms and experimental circulatory loops have gathered importance over the years as they can reproduce hemodynamics at a patient-specific level in terms of both 3D geometry and inlet/outlet boundary conditions. If combined with medical imaging, such as echography, these tools can deepen the knowledge of cardiovascular pathologies. In this work, flow fields in an abdominal aortic aneurysm phantom are reconstructed from Color-Doppler Ultrasound images. In-silico data, obtained from Computational Fluid Dynamics, are used for further comparisons.
CFD and FEM-based Aneurysm Research latest developments and a course on Big Data analysis at the MeDiTATe Summer School in Tinos
The National Technical University of Athens hosted the MeDiTATe project Summer School on CFD/FEM-based aneurysm research and big data analysis. The event took place from 12th to 16th September 2022 on the Island of Tinos, in Greece.
The Early Stage Researchers of the MeDiTATe project had the opportunity to follow several courses and conferences on CFD, FEM, Fluid-Structure Interactions, big data and their application to hemodynamics and aneurysms studies.
The summer school was also an opportunity to strengthen the collaboration among the Early Stage Researchers and make contact with other members and partners of the consortium.
The MeDiTATe project at the workshop “Heart Valve Replacements: Past, Present, and Future Directions”
The University of Sydney, one of the partners of the MeDiTATe project, will be hosting the workshop Heart Valve Replacements: Past, Present, and Future Directions on September 27, 2022.
The meeting is organized by The School of Chemical and Biomolecular Engineering and the School of Medicine. The aim of the group is to bring a better valve to children who require a heart valve replacement on the right side of their heart. The work is also relevant to people of all ages with heart valve disease.
Prof. Marco Evangelos Biancolini, Principal Investigator of the MeDiTATe project, will be participating in the event as one of the international guests giving a speech about Digital Twins applied in medical projects including MeDiTATe.
The event registration, free for both on-site and online attendance, is available at this link.
The MeDiTATe project will participate in the 14th European Fluid Mechanics Conference
The MeDiTATe project will be participating in the 14th European Fluid Mechanics Conference (EFMC14), that will take place in Athens, Greece on September 13-16, 2022.
Two of our Early Stage Researchers, Bhargav Krishna Chitneedi and Christos Karliampas, will be presenting their activities at this Conference. A short summary of their work is reported in the following lines.
Bhargav Krishna Chitneedi – ESR 04: Numerical Prediction of Blood Flow in Arteries, Interacting with Walls, on GPUs. In this article, a framework for the Fluid-Structure Interactions (FSI) simulations of vascular blood flows, running on Graphics Processing Units (GPUs) is presented. The FSI simulations are performed, based on the partitioned approach, with the GPU-enhanced Finite Volume CFD code, PUMA (developed by the PCOpt/NTUA) for fluids, coupled with the open-source finite element solver, CalculiX, for the vessel walls. The flow is assumed to be laminar, and the non-Newtonian behaviour of the blood is represented using the Carreau model. The isotropic linear elastic model of CalculiX is used for the arterial wall computations. The GPUs are used for the flow simulation, which is expensive because of using fine mesh with boundary layers at wall vicinity. The structural analysis uses much coarser meshes and runs inexpensively on the CPU. The Precice coupling framework is used which also enables using non-matching timesteps and non-matching meshes to perform FSI simulations. The temporal velocity profile at the inlet and the 3-element Windkessel pressure model at the outlet are imposed. The FSI simulations are performed on patient-specific geometries of thoracic aorta with realistic flow conditions. The hemodynamic metrics like wall shear stresses are computed to predict the rupture prone areas which helps medical experts to take an informed decision to improve healthcare.
Christos Karliampas – ESR 06: Hemodynamic simulation of the thoracic aorta in the presence of uncertainties, using a reduced-order polynomial chaos expansion. The purpose of this paper is to investigate the sensitivity of the inlet flow profile in cardiovascular simulations of thoracic aorta. Due to limited, poor quality, patients’ data, it is a compromise to resort to idealized spatially distributed velocity profiles as the inlet boundary condition in undertaken simulations. This assumption introduces uncertainties, affecting the numerical solution in the entire fluid domain. Here, Womersley number is chosen to parameterize the imposed inlet velocity and a fast reconstruction method is proposed, based on the proper orthogonal decomposition polynomial chaos expansion, to analyze the velocity profile uncertainty propagation on the hemodynamic metrics.”
The MeDiTATe project at the VPH 2022 Conference
The MeDiTATe project will be participating in the VPH 2022 – Virtual Physiological Human Conference that will be held in Porto from 6th to 9th September 2022.
Two of our Early Stage Researchers, Antonio Martinez Pascual and Martino Andrea Scarpolini, will be presenting their work described in the following sections.
Antonio Martinez Pascual – ESR 01: Impact of Image Segmentation Variability on Hemodynamic Prediction of Flow Quantities in AAA. Computational fluid dynamics (CFD) can be used to compute various hemodynamic factors for abdominal aortic aneurysms (AAA), which may be used to assist with the risk assessment. Variability in the shape of the AAA lumen may arise during segmentation of the lumen wall from the medical image data. The resulting variation in local geometrical factors, such as the diameter and curvature, may impact the rupture prediction. Therefore, this study aims to estimate the effect of geometric uncertainty due to the segmentation process on WSS and wall pressure predictions.
Martino Andrea Scarpolini – ESR 09: A correlation study between morphological parameters and hemodynamics indices: an integrated deep learning and statistical shape modeling approach.
Deep Learning (DL) has been demonstrated to be a promising tool to estimate hemodynamic indices in several cardiovascular districts. Statistical shape (SS) analysis, on the other hand, is an established tool to quantitatively assess geometric variability. In this work, these two methods are combined to develop a real-time estimation method for hemodynamic indices of the whole thoracic aorta.
A new MeDiTATe Project publication: Towards the 2D velocity reconstruction in abdominal aorta from Color-Doppler Ultrasound
Maria Nicole Antonuccio, ESR 14 of the MeDiTATe project, published the paper titled Towards the 2D velocity reconstruction in abdominal aorta from Color-Doppler Ultrasound in Medical Engineering & Physics Journal.
The work was developed in collaboration with Hernan G. Morales, Alexandre This and Laurence Rouet from Philips Research Paris, Katia Capellini and Simona Celi from BioCardioLab (Fondazione Toscana G. Monasterio), Stéphane Avril from Mines Saint-Étienne.
The paper whose abstract is reported in the following lines, is available at this link.
Magnetic resonance imaging (MRI) is the preferred modality to assess hemodynamics in healthy and diseased blood vessels. As an affordable and non-invasive alternative, Color-Doppler imaging is a good candidate. Nevertheless, Color-Doppler acquisitions provide only partial information on the blood velocity within the vessel. We present a framework to reconstruct 2D velocity fields in the aorta. We generated 2D Color-Doppler-like images from patient-specific Computational Fluid Dynamics (CFD) models of abdominal aortas and evaluated the framework’s performance. The 2D velocity field reconstruction is based on the minimization of a cost function, in which the reconstructed velocities are constrained to satisfy fluid dynamics principles. The numerical evaluations show that the reconstructed vector flow fields agree with ground-truth velocities, with an average magnitude error of less than and an average angular error of less than . We lastly illustrate the 2D velocity field reconstructed from in-vivo Color-Doppler data. Observing the hemodynamics in patients is expected to have a clinical impact in assessing disease development and progression, such as abdominal aortic aneurysms.
Latest publication in MeDiTATe project. EndoBeams.jl: A Julia finite element package for beam-to-surface contact problems in cardiovascular mechanics
Beatrice Bisighini, ESR 03 in the MeDiTATe project, published the paper titled EndoBeams.jl: A Julia finite element package for beam-to-surface contact problems in cardiovascular mechanics on Advances in Engineering Software journal.
The work was developed in collaboration with Miquel Aguirre, Baptiste Pierrat and Stéphane Avril from Mines Saint-Étienne and David Perrin from PrediSurge.
The paper, whose abstract is reported in the following lines, is available at this link.
The increasing use of mini-invasive and endovascular surgical techniques is at the origin of the pressing need for
computational models to support planning and training. Several implantable devices have a wire-like structure,
which can be modelled using beam elements. Our objective is to create an efficient Finite Element (FE) modelling
framework for such devices. For that, we developed the EndoBeams.jl package, written exclusively in Julia, for
the numerical simulation of contact interactions between wire-like structures and rigid surfaces. The package is
based on a 3D FE corotational formulation for frictional contact dynamics of beams. The rigid target surface is
described implicitly using a signed distance field, predefined in a volumetric grid. Since the main objective
behind this package is to find the best compromise between computational speed and code readability, the al-
gorithm, originally in Matlab, was translated and optimised in Julia, a programming language designed to
combine the performance of low-level languages with the productivity of high-level ones. To evaluate the
robustness, a set of tests were conducted to compare the simulation results and computational time of Endo-
Beams.jl against literature data, the original Matlab code and the commercial software Abaqus. The tests proved
the accuracy of the underlying beam-to-surface formulation and showed the drastic performance improvement of
the Julia code with respect to the original one. EndoBeams.jl is also slightly faster than Abaqus. Finally, as a proof
of concept in cardiovascular medicine, a further example is shown where the deployment of a braided stent is
simulated within an idealised artery.
Recent Posts
- MeDiTATe final video: results
- Leonardo Geronzi ESR 02 of the MeDiTATe Project among Forbes Italia’s Top 100 Under 30
- Monica Emendi successfully defended her PhD thesis defense
- Martino Andrea Scarpolini successfully defended his PhD thesis defense
- Eirini Kardampiki successfully defended her PhD thesis defense
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